HL_8V9L_022

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

8V9L|1|A|U|739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_022 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.1059

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8V9L|1|A|U|735
8V9L|1|A|G|736
8V9L|1|A|A|737
8V9L|1|A|A|738
8V9L|1|A|U|739
8V9L|1|A|A|740
8V9L|1|A|G|741

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL33A

Chain 7

50S ribosomal protein L35

Chain N

50S ribosomal protein L15