HL_8V9L_038

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

8V9L|1|A|U|1511, 8V9L|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_038 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0979

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8V9L|1|A|G|1504
8V9L|1|A|U|1505
8V9L|1|A|U|1506
8V9L|1|A|G|1507
8V9L|1|A|A|1508
8V9L|1|A|U|1509
8V9L|1|A|A|1510
8V9L|1|A|U|1511
8V9L|1|A|U|1512
8V9L|1|A|C|1513

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL23