HL_8V9L_039

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCAGUGGUAAUA

Length

12 nucleotides

Bulged bases

8V9L|1|A|G|1674, 8V9L|1|A|U|1675, 8V9L|1|A|U|1681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_039 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5608

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_93135.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8V9L|1|A|U|1671
8V9L|1|A|C|1672
8V9L|1|A|A|1673
8V9L|1|A|G|1674
8V9L|1|A|U|1675
8V9L|1|A|G|1676
8V9L|1|A|G|1677
8V9L|1|A|U|1678
8V9L|1|A|A|1679
8V9L|1|A|A|1680
8V9L|1|A|U|1681
8V9L|1|A|A|1682

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L17