HL_8V9L_067

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_067 not in the Motif Atlas

Geometric match to HL_7A0S_063

Geometric discrepancy: 0.0781

The information below is about HL_7A0S_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8V9L|1|A|C|2882
8V9L|1|A|G|2883
8V9L|1|A|A|2884
8V9L|1|A|G|2885
8V9L|1|A|A|2886
8V9L|1|A|G|2887

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain x

Elongation factor Tu

Chain z

Ribosome hibernation factor Balon (MSMEG_1130)