HL_8V9L_075
3D structure
- PDB id
- 8V9L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V9L_075 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.0957
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8V9L|1|a|U|16
8V9L|1|a|U|17
8V9L|1|a|U|18
8V9L|1|a|G|19
8V9L|1|a|A|20
8V9L|1|a|U|21
8V9L|1|a|C|22
8V9L|1|a|C|23
8V9L|1|a|U|24
8V9L|1|a|G|25
8V9L|1|a|G|26
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain e
- Small ribosomal subunit protein uS5
- Chain l
- 30S ribosomal protein S12
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