HL_8V9L_092

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUUCCUUG

Length

9 nucleotides

Bulged bases

8V9L|1|a|U|827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_092 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2344

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

8V9L|1|a|C|820
8V9L|1|a|C|821
8V9L|1|a|U|822
8V9L|1|a|U|823
8V9L|1|a|C|824
8V9L|1|a|C|825
8V9L|1|a|U|826
8V9L|1|a|U|827
8V9L|1|a|G|828

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain r

Small ribosomal subunit protein bS18B