HL_8V9L_100

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUUAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_100 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.3927

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V9L|1|a|C|1114
8V9L|1|a|G|1115
8V9L|1|a|U|1116
8V9L|1|a|U|1117
8V9L|1|a|A|1118
8V9L|1|a|U|1119
8V9L|1|a|G|1120
8V9L|1|a|G|1121

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9