HL_8V9L_103
3D structure
- PDB id
- 8V9L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V9L_103 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.2433
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8V9L|1|a|C|1296
8V9L|1|a|U|1297
8V9L|1|a|G|1298
8V9L|1|a|C|1299
8V9L|1|a|A|1300
8V9L|1|a|A|1301
8V9L|1|a|C|1302
8V9L|1|a|U|1303
8V9L|1|a|C|1304
8V9L|1|a|G|1305
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain m
- 30S ribosomal protein S13
- Chain n
- Small ribosomal subunit protein uS14B
- Chain s
- 30S ribosomal protein S19
Coloring options: