HL_8V9L_108
3D structure
- PDB id
- 8V9L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GA(PSU)UGAAAA(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V9L_108 not in the Motif Atlas
- Homologous match to HL_5EL4_222
- Geometric discrepancy: 0.3329
- The information below is about HL_5EL4_222
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8V9L|1|y|G|30
8V9L|1|y|A|31
8V9L|1|y|PSU|32
8V9L|1|y|U|33
8V9L|1|y|G|34
8V9L|1|y|A|35
8V9L|1|y|A|36
8V9L|1|y|A|37
8V9L|1|y|A|38
8V9L|1|y|PSU|39
8V9L|1|y|C|40
Current chains
- Chain y
- pe/E deacylated phenylanaline-tRNA
Nearby chains
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain i
- 30S ribosomal protein S9
- Chain k
- 30S ribosomal protein S11
- Chain m
- 30S ribosomal protein S13
- Chain v
- poly-U mRNA
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