HL_8VIO_002

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

8VIO|1|5|U|34, 8VIO|1|5|C|35, 8VIO|1|5|A|36, 8VIO|1|5|U|37

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VIO_002 not in the Motif Atlas

Homologous match to HL_6PMO_004

Geometric discrepancy: 0.3301

The information below is about HL_6PMO_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|5|G|32
8VIO|1|5|C|33
8VIO|1|5|U|34
8VIO|1|5|C|35
8VIO|1|5|A|36
8VIO|1|5|U|37
8VIO|1|5|A|38
8VIO|1|5|A|39
8VIO|1|5|C|40

Current chains

Chain 5

E-tRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain o

30S ribosomal protein S9