HL_8VIO_011

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VIO_011 not in the Motif Atlas

Homologous match to HL_4WF9_008

Geometric discrepancy: 0.1587

The information below is about HL_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

13

Unit IDs

8VIO|1|A|U|246
8VIO|1|A|G|247
8VIO|1|A|G|248
8VIO|1|A|C|249
8VIO|1|A|G|250
8VIO|1|A|A|251
8VIO|1|A|G|252

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35