HL_8VIO_012

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUGAUACCGGGUAGGGGUU

Length

19 nucleotides

Bulged bases

8VIO|1|A|U|285, 8VIO|1|A|C|291, 8VIO|1|A|G|292, 8VIO|1|A|U|301

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|A|G|284
8VIO|1|A|U|285
8VIO|1|A|G|286
8VIO|1|A|A|287
8VIO|1|A|U|288
8VIO|1|A|A|289
8VIO|1|A|C|290
8VIO|1|A|C|291
8VIO|1|A|G|292
8VIO|1|A|G|293
8VIO|1|A|G|294
8VIO|1|A|U|295
8VIO|1|A|A|296
8VIO|1|A|G|297
8VIO|1|A|G|298
8VIO|1|A|G|299
8VIO|1|A|G|300
8VIO|1|A|U|301
8VIO|1|A|U|302

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9