HL_8VIO_034

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8VIO|1|A|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VIO_034 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4963

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VIO|1|A|C|1182
8VIO|1|A|U|1183
8VIO|1|A|U|1184
8VIO|1|A|A|1185
8VIO|1|A|G|1186
8VIO|1|A|A|1187
8VIO|1|A|A|1188
8VIO|1|A|G|1189
8VIO|1|A|C|1190
8VIO|1|A|A|1191
8VIO|1|A|G|1192

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain J

50S ribosomal protein L11

Chain N

Large ribosomal subunit protein uL16