HL_8VIO_043

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UCAGUGGUAAUA

Length

12 nucleotides

Bulged bases

8VIO|1|A|A|1673, 8VIO|1|A|G|1674, 8VIO|1|A|U|1675, 8VIO|1|A|U|1681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VIO|1|A|U|1671
8VIO|1|A|C|1672
8VIO|1|A|A|1673
8VIO|1|A|G|1674
8VIO|1|A|U|1675
8VIO|1|A|G|1676
8VIO|1|A|G|1677
8VIO|1|A|U|1678
8VIO|1|A|A|1679
8VIO|1|A|A|1680
8VIO|1|A|U|1681
8VIO|1|A|A|1682

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17