HL_8VIO_060

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8VIO|1|A|G|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VIO_060 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.0945

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8VIO|1|A|C|2472
8VIO|1|A|U|2473
8VIO|1|A|G|2474
8VIO|1|A|G|2475
8VIO|1|A|G|2476
8VIO|1|A|G|2477
8VIO|1|A|C|2478
8VIO|1|A|G|2479
8VIO|1|A|G|2480

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain N

Large ribosomal subunit protein uL16

Chain X

50S ribosomal protein L27