HL_8VIO_089

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8VIO|1|a|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VIO_089 not in the Motif Atlas

Homologous match to HL_6CZR_082

Geometric discrepancy: 0.3045

The information below is about HL_6CZR_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

8VIO|1|a|C|419
8VIO|1|a|U|420
8VIO|1|a|U|421
8VIO|1|a|C|422
8VIO|1|a|G|423
8VIO|1|a|G|424

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain j

30S ribosomal protein S4