HL_8VIO_103

3D structure

PDB id

8VIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGUUAUGG

Length

8 nucleotides

Bulged bases

8VIO|1|a|G|1120

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VIO_103 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.3497

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8VIO|1|a|C|1114
8VIO|1|a|G|1115
8VIO|1|a|U|1116
8VIO|1|a|U|1117
8VIO|1|a|A|1118
8VIO|1|a|U|1119
8VIO|1|a|G|1120
8VIO|1|a|G|1121

Current chains

Chain a

16S ribosomal RNA

Nearby chains