HL_8VK0_028

3D structure

PDB id

8VK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CCCCACAGGG

Length

10 nucleotides

Bulged bases

8VK0|1|A|C|1004

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VK0_028 not in the Motif Atlas

Homologous match to HL_5J7L_158

Geometric discrepancy: 0.4275

The information below is about HL_5J7L_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VK0|1|A|C|999
8VK0|1|A|C|1000
8VK0|1|A|C|1001
8VK0|1|A|C|1002
8VK0|1|A|A|1003
8VK0|1|A|C|1004
8VK0|1|A|A|1005
8VK0|1|A|G|1006
8VK0|1|A|G|1007
8VK0|1|A|G|1008

Current chains

Chain A

23S ribosomal RNA

Nearby chains