HL_8VK0_056
3D structure
- PDB id
- 8VK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 8VK0|1|A|G|2474
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VK0_056 not in the Motif Atlas
- Homologous match to HL_7A0S_052
- Geometric discrepancy: 0.1153
- The information below is about HL_7A0S_052
- Detailed Annotation
- LSU P loop
- Broad Annotation
- LSU P loop
- Motif group
- HL_11974.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
8VK0|1|A|C|2472
8VK0|1|A|U|2473
8VK0|1|A|G|2474
8VK0|1|A|G|2475
8VK0|1|A|G|2476
8VK0|1|A|G|2477
8VK0|1|A|C|2478
8VK0|1|A|G|2479
8VK0|1|A|G|2480
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- GTPase HflX
- Chain N
- Large ribosomal subunit protein uL16
- Chain X
- 50S ribosomal protein L27
Coloring options: