HL_8VKI_009

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGUGAUACCGGGUAGGGGUUG

Length

21 nucleotides

Bulged bases

8VKI|1|A|U|285, 8VKI|1|A|G|286, 8VKI|1|A|U|302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKI|1|A|U|283
8VKI|1|A|G|284
8VKI|1|A|U|285
8VKI|1|A|G|286
8VKI|1|A|A|287
8VKI|1|A|U|288
8VKI|1|A|A|289
8VKI|1|A|C|290
8VKI|1|A|C|291
8VKI|1|A|G|292
8VKI|1|A|G|293
8VKI|1|A|G|294
8VKI|1|A|U|295
8VKI|1|A|A|296
8VKI|1|A|G|297
8VKI|1|A|G|298
8VKI|1|A|G|299
8VKI|1|A|G|300
8VKI|1|A|U|301
8VKI|1|A|U|302
8VKI|1|A|G|303

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9