HL_8VKI_037

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGACAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKI_037 not in the Motif Atlas

Homologous match to HL_9DFE_033

Geometric discrepancy: 0.1383

The information below is about HL_9DFE_033

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VKI|1|A|C|1478
8VKI|1|A|G|1479
8VKI|1|A|A|1480
8VKI|1|A|C|1481
8VKI|1|A|A|1482
8VKI|1|A|G|1483

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Y

50S Ribosomal Protein L28

Chain d

50S ribosomal protein L34