HL_8VKI_038

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

8VKI|1|A|U|1511, 8VKI|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKI_038 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1338

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VKI|1|A|G|1504
8VKI|1|A|U|1505
8VKI|1|A|U|1506
8VKI|1|A|G|1507
8VKI|1|A|A|1508
8VKI|1|A|U|1509
8VKI|1|A|A|1510
8VKI|1|A|U|1511
8VKI|1|A|U|1512
8VKI|1|A|C|1513

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23