HL_8VKI_043

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

8VKI|1|A|A|1832, 8VKI|1|A|A|1834, 8VKI|1|A|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKI_043 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.1065

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8VKI|1|A|C|1830
8VKI|1|A|A|1831
8VKI|1|A|A|1832
8VKI|1|A|C|1833
8VKI|1|A|A|1834
8VKI|1|A|C|1835
8VKI|1|A|A|1836
8VKI|1|A|G|1837

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S Ribosomal Protein L22

Chain d

50S ribosomal protein L34