HL_8VKI_050

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

8VKI|1|A|A|2254, 8VKI|1|A|A|2255, 8VKI|1|A|G|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKI_050 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.1248

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8VKI|1|A|G|2251
8VKI|1|A|U|2252
8VKI|1|A|A|2253
8VKI|1|A|A|2254
8VKI|1|A|A|2255
8VKI|1|A|G|2256
8VKI|1|A|A|2257
8VKI|1|A|U|2258
8VKI|1|A|G|2259
8VKI|1|A|C|2260

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S Ribosomal Protein L37

Chain D

50S ribosomal protein L3

Chain b

50S ribosomal protein L32