HL_8VKI_053
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 8VKI|1|A|G|2474
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VKI_053 not in the Motif Atlas
- Homologous match to HL_5J7L_186
- Geometric discrepancy: 0.0907
- The information below is about HL_5J7L_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8VKI|1|A|C|2472
8VKI|1|A|U|2473
8VKI|1|A|G|2474
8VKI|1|A|G|2475
8VKI|1|A|G|2476
8VKI|1|A|G|2477
8VKI|1|A|C|2478
8VKI|1|A|G|2479
8VKI|1|A|G|2480
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain N
- Large ribosomal subunit protein uL16
- Chain X
- 50S ribosomal protein L27
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