HL_8VKI_056
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UGUAAGUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VKI_056 not in the Motif Atlas
- Homologous match to HL_4WF9_052
- Geometric discrepancy: 0.1375
- The information below is about HL_4WF9_052
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 27
Unit IDs
8VKI|1|A|U|2548
8VKI|1|A|G|2549
8VKI|1|A|U|2550
8VKI|1|A|A|2551
8VKI|1|A|A|2552
8VKI|1|A|G|2553
8VKI|1|A|U|2554
8VKI|1|A|G|2555
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S Ribosomal Protein L5
- Chain N
- Large ribosomal subunit protein uL16
- Chain X
- 50S ribosomal protein L27
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