HL_8VKI_060
3D structure
- PDB id
- 8VKI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- AGUCCAUAU
- Length
- 9 nucleotides
- Bulged bases
- 8VKI|1|A|U|2697
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VKI_060 not in the Motif Atlas
- Homologous match to HL_9DFE_058
- Geometric discrepancy: 0.2538
- The information below is about HL_9DFE_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.1
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8VKI|1|A|A|2695
8VKI|1|A|G|2696
8VKI|1|A|U|2697
8VKI|1|A|C|2698
8VKI|1|A|C|2699
8VKI|1|A|A|2700
8VKI|1|A|U|2701
8VKI|1|A|A|2702
8VKI|1|A|U|2703
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- GTPase HflX
- Chain G
- 50S ribosomal protein L6
- Chain N
- Large ribosomal subunit protein uL16
- Chain f
- 50S ribosomal protein L36
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