HL_8VKI_068

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCAGACCAC

Length

9 nucleotides

Bulged bases

8VKI|1|A|C|3041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKI_068 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.2367

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VKI|1|A|G|3040
8VKI|1|A|C|3041
8VKI|1|A|A|3042
8VKI|1|A|G|3043
8VKI|1|A|A|3044
8VKI|1|A|C|3045
8VKI|1|A|C|3046
8VKI|1|A|A|3047
8VKI|1|A|C|3048

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17