HL_8VKW_031

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GGUUGGCUUAGAAGCAGCCACCC

Length

23 nucleotides

Bulged bases

8VKW|1|A|G|1177, 8VKW|1|A|U|1178, 8VKW|1|A|U|1183, 8VKW|1|A|U|1184, 8VKW|1|A|A|1195, 8VKW|1|A|C|1196, 8VKW|1|A|C|1197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKW|1|A|G|1176
8VKW|1|A|G|1177
8VKW|1|A|U|1178
8VKW|1|A|U|1179
8VKW|1|A|G|1180
8VKW|1|A|G|1181
8VKW|1|A|C|1182
8VKW|1|A|U|1183
8VKW|1|A|U|1184
8VKW|1|A|A|1185
8VKW|1|A|G|1186
8VKW|1|A|A|1187
8VKW|1|A|A|1188
8VKW|1|A|G|1189
8VKW|1|A|C|1190
8VKW|1|A|A|1191
8VKW|1|A|G|1192
8VKW|1|A|C|1193
8VKW|1|A|C|1194
8VKW|1|A|A|1195
8VKW|1|A|C|1196
8VKW|1|A|C|1197
8VKW|1|A|C|1198

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain J

50S ribosomal protein L11