HL_8VKW_044

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

8VKW|1|A|A|1832, 8VKW|1|A|A|1834, 8VKW|1|A|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKW_044 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1265

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8VKW|1|A|C|1830
8VKW|1|A|A|1831
8VKW|1|A|A|1832
8VKW|1|A|C|1833
8VKW|1|A|A|1834
8VKW|1|A|C|1835
8VKW|1|A|A|1836
8VKW|1|A|G|1837

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S Ribosomal Protein L22

Chain d

50S ribosomal protein L34