HL_8VKW_051

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GGUGGUAACUAUAACCAUC

Length

19 nucleotides

Bulged bases

8VKW|1|A|A|2136, 8VKW|1|A|A|2137, 8VKW|1|A|C|2138, 8VKW|1|A|U|2139, 8VKW|1|A|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKW|1|A|G|2130
8VKW|1|A|G|2131
8VKW|1|A|U|2132
8VKW|1|A|G|2133
8VKW|1|A|G|2134
8VKW|1|A|U|2135
8VKW|1|A|A|2136
8VKW|1|A|A|2137
8VKW|1|A|C|2138
8VKW|1|A|U|2139
8VKW|1|A|A|2140
8VKW|1|A|U|2141
8VKW|1|A|A|2142
8VKW|1|A|A|2143
8VKW|1|A|C|2144
8VKW|1|A|C|2145
8VKW|1|A|A|2146
8VKW|1|A|U|2147
8VKW|1|A|C|2148

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX