HL_8VKW_055

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8VKW|1|A|G|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKW_055 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1511

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

8VKW|1|A|C|2472
8VKW|1|A|U|2473
8VKW|1|A|G|2474
8VKW|1|A|G|2475
8VKW|1|A|G|2476
8VKW|1|A|G|2477
8VKW|1|A|C|2478
8VKW|1|A|G|2479
8VKW|1|A|G|2480

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

GTPase HflX

Chain N

Large ribosomal subunit protein uL16

Chain X

50S ribosomal protein L27