HL_8VKW_057

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

GGACGGCAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VKW_057 not in the Motif Atlas

Homologous match to HL_9DFE_053

Geometric discrepancy: 0.5434

The information below is about HL_9DFE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKW|1|A|G|2527
8VKW|1|A|G|2528
8VKW|1|A|A|2529
8VKW|1|A|C|2530
8VKW|1|A|G|2531
8VKW|1|A|G|2532
8VKW|1|A|C|2533
8VKW|1|A|A|2534
8VKW|1|A|A|2535
8VKW|1|A|U|2536
8VKW|1|A|C|2537

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S Ribosomal Protein L5