HL_8VL1_006
3D structure
- PDB id
- 8VL1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- 8VL1|1|B|C|56, 8VL1|1|B|A|57
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VL1_006 not in the Motif Atlas
- Geometric match to HL_1J2B_002
- Geometric discrepancy: 0.3423
- The information below is about HL_1J2B_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8VL1|1|B|G|53
8VL1|1|B|U|54
8VL1|1|B|U|55
8VL1|1|B|C|56
8VL1|1|B|A|57
8VL1|1|B|A|58
8VL1|1|B|A|59
8VL1|1|B|U|60
8VL1|1|B|C|61
Current chains
- Chain B
- E-site and P-site tRNA (fMet)
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- 50S ribosomal protein L5
Coloring options: