HL_8VL1_040

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8VL1|1|a|A|196, 8VL1|1|a|A|199

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VL1_040 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0804

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VL1|1|a|G|194
8VL1|1|a|A|195
8VL1|1|a|A|196
8VL1|1|a|A|197
8VL1|1|a|C|198
8VL1|1|a|A|199
8VL1|1|a|U|200
8VL1|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain u

50S ribosomal protein L15