HL_8VL1_093

3D structure

PDB id

8VL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 36 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8VL1|1|a|G|2751, 8VL1|1|a|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VL1_093 not in the Motif Atlas

Geometric match to HL_4WF9_062

Geometric discrepancy: 0.1232

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

8VL1|1|a|C|2745
8VL1|1|a|U|2746
8VL1|1|a|G|2747
8VL1|1|a|A|2748
8VL1|1|a|A|2749
8VL1|1|a|A|2750
8VL1|1|a|G|2751
8VL1|1|a|C|2752
8VL1|1|a|A|2753
8VL1|1|a|U|2754
8VL1|1|a|C|2755
8VL1|1|a|U|2756
8VL1|1|a|A|2757
8VL1|1|a|A|2758
8VL1|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36

Chain s

50S ribosomal protein L13