HL_8VMB_001

3D structure

PDB id

8VMB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of rhinovirus C15 RNA replication element sB-loop mutant in complex with Fab BL3-6

Experimental method

X-RAY DIFFRACTION

Resolution

2.97 Å

Loop

Sequence

GAAACAC

Length

7 nucleotides

Bulged bases

8VMB|1|R|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22584.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

22

Unit IDs

8VMB|1|R|G|18
8VMB|1|R|A|19
8VMB|1|R|A|20
8VMB|1|R|A|21
8VMB|1|R|C|22
8VMB|1|R|A|23
8VMB|1|R|C|24

Current chains

Chain R

RNA (83-MER)

Nearby chains

Chain L

Light Chain of Fab BL3-6

Chain H

Heavy Chain of Fab BL3-6