HL_8VOO_038

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

8VOO|1|a|U|139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOO_038 not in the Motif Atlas

Geometric match to HL_5J7L_030

Geometric discrepancy: 0.2114

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8VOO|1|a|U|137
8VOO|1|a|U|138
8VOO|1|a|U|139
8VOO|1|a|C|140
8VOO|1|a|G|141
8VOO|1|a|A|142

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23