HL_8VOO_055

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOO_055 not in the Motif Atlas

Geometric match to HL_5J7L_154

Geometric discrepancy: 0.0995

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8VOO|1|a|G|712
8VOO|1|a|G|713
8VOO|1|a|U|714
8VOO|1|a|A|715
8VOO|1|a|A|716
8VOO|1|a|C|717
8VOO|1|a|A|718
8VOO|1|a|C|719

Current chains

Chain a

23S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein uS15

Chain h

50S ribosomal protein L2