HL_8VOQ_018

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8VOQ|1|D|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOQ_018 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.1249

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8VOQ|1|D|G|462
8VOQ|1|D|U|463
8VOQ|1|D|U|464
8VOQ|1|D|A|465
8VOQ|1|D|A|466
8VOQ|1|D|U|467
8VOQ|1|D|A|468
8VOQ|1|D|C|469
8VOQ|1|D|C|470

Current chains

Chain D

16S rRNA

Nearby chains