HL_8VOQ_056

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

8VOQ|1|a|A|781, 8VOQ|1|a|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOQ_056 not in the Motif Atlas

Geometric match to HL_5J7L_156

Geometric discrepancy: 0.0804

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8VOQ|1|a|U|779
8VOQ|1|a|G|780
8VOQ|1|a|A|781
8VOQ|1|a|A|782
8VOQ|1|a|A|783
8VOQ|1|a|G|784
8VOQ|1|a|G|785

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2