HL_8VOQ_067

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8VOQ|1|a|U|1396, 8VOQ|1|a|U|1397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOQ_067 not in the Motif Atlas

Geometric match to HL_5J7L_168

Geometric discrepancy: 0.0847

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VOQ|1|a|G|1389
8VOQ|1|a|U|1390
8VOQ|1|a|U|1391
8VOQ|1|a|A|1392
8VOQ|1|a|A|1393
8VOQ|1|a|U|1394
8VOQ|1|a|A|1395
8VOQ|1|a|U|1396
8VOQ|1|a|U|1397
8VOQ|1|a|C|1398

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23