3D structure

PDB id
8VOS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
CUACGG
Length
6 nucleotides
Bulged bases
8VOS|1|D|A|344
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VOS_015 not in the Motif Atlas
Geometric match to HL_5Y85_004
Geometric discrepancy: 0.0886
The information below is about HL_5Y85_004
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_61337.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
49

Unit IDs

8VOS|1|D|C|342
8VOS|1|D|U|343
8VOS|1|D|A|344
8VOS|1|D|C|345
8VOS|1|D|G|346
8VOS|1|D|G|347

Current chains

Chain D
16S rRNA

Nearby chains

Chain t
Large ribosomal subunit protein uL14
Chain y
Large ribosomal subunit protein bL19

Coloring options:


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