3D structure

PDB id
8VOS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
AGAGAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VOS_026 not in the Motif Atlas
Geometric match to HL_8P9A_159
Geometric discrepancy: 0.1453
The information below is about HL_8P9A_159
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

8VOS|1|D|A|1012
8VOS|1|D|G|1013
8VOS|1|D|A|1014
8VOS|1|D|G|1015
8VOS|1|D|A|1016
8VOS|1|D|U|1017

Current chains

Chain D
16S rRNA

Nearby chains

Chain S
Small ribosomal subunit protein uS14
Chain W
Small ribosomal subunit protein uS19

Coloring options:


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