HL_8VOS_029

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

8VOS|1|D|C|1136, 8VOS|1|D|G|1139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_029 not in the Motif Atlas

Geometric match to HL_4LFB_026

Geometric discrepancy: 0.3894

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

8VOS|1|D|G|1134
8VOS|1|D|U|1135
8VOS|1|D|C|1136
8VOS|1|D|C|1137
8VOS|1|D|G|1138
8VOS|1|D|G|1139
8VOS|1|D|C|1140

Current chains

Chain D

16S rRNA

Nearby chains

Chain O

Small ribosomal subunit protein uS9