HL_8VOS_032

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_032 not in the Motif Atlas

Geometric match to HL_4LFB_029

Geometric discrepancy: 0.0727

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VOS|1|D|C|1314
8VOS|1|D|U|1315
8VOS|1|D|G|1316
8VOS|1|D|C|1317
8VOS|1|D|A|1318
8VOS|1|D|A|1319
8VOS|1|D|C|1320
8VOS|1|D|U|1321
8VOS|1|D|C|1322
8VOS|1|D|G|1323

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein uS14

Chain W

Small ribosomal subunit protein uS19

Chain X

Small ribosomal subunit protein uS13