HL_8VOS_074

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8VOS|1|a|U|1729, 8VOS|1|a|C|1732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_074 not in the Motif Atlas

Geometric match to HL_5J7L_214

Geometric discrepancy: 0.2731

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8VOS|1|a|C|1727
8VOS|1|a|C|1728
8VOS|1|a|U|1729
8VOS|1|a|C|1730
8VOS|1|a|G|1731
8VOS|1|a|C|1732
8VOS|1|a|G|1733

Current chains

Chain a

23S rRNA

Nearby chains