HL_8VOS_093

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8VOS|1|a|G|2751, 8VOS|1|a|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VOS_093 not in the Motif Atlas

Geometric match to HL_4WF9_062

Geometric discrepancy: 0.1202

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

8VOS|1|a|C|2745
8VOS|1|a|U|2746
8VOS|1|a|G|2747
8VOS|1|a|A|2748
8VOS|1|a|A|2749
8VOS|1|a|A|2750
8VOS|1|a|G|2751
8VOS|1|a|C|2752
8VOS|1|a|A|2753
8VOS|1|a|U|2754
8VOS|1|a|C|2755
8VOS|1|a|U|2756
8VOS|1|a|A|2757
8VOS|1|a|A|2758
8VOS|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein uL6

Chain q

50S ribosomal protein L36

Chain s

Large ribosomal subunit protein uL13