HL_8VPK_003

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

8VPK|1|A|A|122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VPK_003 not in the Motif Atlas

Homologous match to HL_9DFE_003

Geometric discrepancy: 0.2967

The information below is about HL_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8VPK|1|A|G|120
8VPK|1|A|G|121
8VPK|1|A|A|122
8VPK|1|A|A|123
8VPK|1|A|A|124
8VPK|1|A|C|125

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23

Chain d

50S ribosomal protein L34