HL_8VPK_004

3D structure

PDB id

8VPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-B-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGCACGAGUGAUGUCGUGU

Length

19 nucleotides

Bulged bases

8VPK|1|A|G|137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VPK|1|A|G|128
8VPK|1|A|G|129
8VPK|1|A|C|130
8VPK|1|A|A|131
8VPK|1|A|C|132
8VPK|1|A|G|133
8VPK|1|A|A|134
8VPK|1|A|G|135
8VPK|1|A|U|136
8VPK|1|A|G|137
8VPK|1|A|A|138
8VPK|1|A|U|139
8VPK|1|A|G|140
8VPK|1|A|U|141
8VPK|1|A|C|142
8VPK|1|A|G|143
8VPK|1|A|U|144
8VPK|1|A|G|145
8VPK|1|A|U|146

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23

Chain Z

50S ribosomal protein L29